47 lines
1.9 KiB
Markdown
47 lines
1.9 KiB
Markdown
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[](https://travis-ci.org/BMCV/docker-paraviewweb)
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[](https://hub.docker.com/r/bmcv/galaxy-paraviewweb/)
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[](https://hub.docker.com/r/bmcv/galaxy-paraviewweb/)
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Docker ParaViewWeb Container
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========================
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This [ParaViewWeb](http://paraviewweb.kitware.com/) Docker container is used by the [Galaxy Project](https://galaxyproject.org/).
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Usage
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=====
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* Build your own image and run it
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[Docker](https://www.docker.com) is a pre-requirement for this project. You can build the container with:
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```bash
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docker build -t paraviewweb .
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```
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The build process can take some time, but if finished you can run your container with:
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```bash
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docker run -p 8777:8777 -v /home/user/paraviewweb/input/:/input/ -v /home/user/paraviewweb/output/:/output/ paraviewweb
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```
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and you will have a running [ParaViewWeb](http://paraviewweb.kitware.com/) instance on ``http://localhost:8777/apps/Visualizer``.
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Environment Variables
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=====================
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Some environment variables are made available to the user which will allow for configuring the behaviour of individual instances.
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Variable | Use
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------------------- | ---
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`DATASET_HID` | Path of file relative to /input which is loaded on startup
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Acknowledgment
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========================
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This work was supported by the BMBF-funded Heidelberg Center for Human Bioinformatics (HD-HuB) within the German Network for Bioinformatics Infrastructure (de.NBI) #031A537C.
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Works best with
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=====================
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* [Galaxy Image Analysis Tools](https://github.com/ThomasWollmann/galaxy-image-analysis)
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* [Galaxy Imaging](https://github.com/bgruening/docker-galaxy-imaging)
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